5-Fluorodeoxyuridine Monophosphate (FdUMP)

5-Fluorodeoxyuridine monophosphate (FdUMP) is a molecule that is a mechanism-based inhibitor. Irreversible binding of FdUMP to thymidylate synthase occurs only in the presence of 5,10-methylenetetrahydrofolate, a cofactor for the reaction catalyzed by thymidylate synthase (Figure 22.18). Crystallographic analysis of thymidylate synthase with dUMP and an analog of 5,10-methylenetetrahydrofolate (that could not be acted on by the enzyme) revealed that thymidylate synthase normally makes a transient covalent bond in the process of catalysis of the reaction. Apparently FdUMP's structure traps the enzyme-substrate covalent bond in the reaction intermediate and prevents it from breaking down, thereby halting the enzyme from acting.

See also: Drug Design